STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAT20635.1Hypothetical protein. (620 aa)    
Predicted Functional Partners:
BAT19277.1
Alginate export domain protein.
  
 
 0.828
BAT20993.1
TonB-dependent ferric iron siderophore receptor.
  
     0.773
BAT19763.1
Outer membrane protein family DUF1597 domain protein; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
  
   
 0.750
BAT20487.1
TonB-dependent outer membrane colicin I receptor; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.744
BAT18933.1
Lipoprotein.
    
 
 0.735
BAT19775.1
TonB-dependent receptor; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
  
     0.669
BAT19322.1
TonB-dependent outer membrane receptor.
  
     0.667
BAT19000.1
TonB-dependent outer membrane colicin I receptor; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
  
     0.619
BAT20999.1
Fusaric acid resistance protein-like domain protein.
  
    0.609
BAT20851.1
aspartyl-tRNA synthetase; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
  
     0.598
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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