A0A1Y1YLC2 protein (Clohesyomyces aquaticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1YLC2

Uncharacterized protein. (232 aa)

Predicted Functional Partners:

A0A1Y2A521

0.558

A0A1Y2A0E1

0.539

A0A1Y1YMI7

0.534

A0A1Y1Z9U5

0.534

A0A1Y2A0Q2

0.534

A0A1Y2ABW0

0.534

A0A1Y1Y4Q8

0.533

A0A1Y1YGN5

0.532

A0A1Y2AB69

0.529

A0A1Y1ZRB3

0.497

Your Current Organism:

Clohesyomyces aquaticus

NCBI taxonomy Id: 1231657
Other names: C. aquaticus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1Y4Q8	A0A1Y1YLC2	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1YGN5	A0A1Y1YLC2	UBA domain-containing protein.	Uncharacterized protein.	0.532
A0A1Y1YGN5	A0A1Y1ZRB3	UBA domain-containing protein.	Polyubiquitin.	0.832
A0A1Y1YGN5	A0A1Y2AB69	UBA domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.624
A0A1Y1YLC2	A0A1Y1Y4Q8	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1Y1YLC2	A0A1Y1YGN5	Uncharacterized protein.	UBA domain-containing protein.	0.532
A0A1Y1YLC2	A0A1Y1YMI7	Uncharacterized protein.	HAD-like domain-containing protein.	0.534
A0A1Y1YLC2	A0A1Y1Z9U5	Uncharacterized protein.	HAD superfamily hydrolase-like protein.	0.534
A0A1Y1YLC2	A0A1Y1ZRB3	Uncharacterized protein.	Polyubiquitin.	0.497
A0A1Y1YLC2	A0A1Y2A0E1	Uncharacterized protein.	ClpP/crotonase-like domain-containing protein.	0.539
A0A1Y1YLC2	A0A1Y2A0Q2	Uncharacterized protein.	CDP-alcohol phosphatidyltransferase-domain-containing protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.534
A0A1Y1YLC2	A0A1Y2A521	Uncharacterized protein.	PH domain-containing protein.	0.558
A0A1Y1YLC2	A0A1Y2AB69	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.529
A0A1Y1YLC2	A0A1Y2ABW0	Uncharacterized protein.	Cat eye syndrome critical region protein 5.	0.534
A0A1Y1YMI7	A0A1Y1YLC2	HAD-like domain-containing protein.	Uncharacterized protein.	0.534
A0A1Y1YMI7	A0A1Y1Z9U5	HAD-like domain-containing protein.	HAD superfamily hydrolase-like protein.	0.854
A0A1Y1YMI7	A0A1Y2A0Q2	HAD-like domain-containing protein.	CDP-alcohol phosphatidyltransferase-domain-containing protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.867
A0A1Y1YMI7	A0A1Y2ABW0	HAD-like domain-containing protein.	Cat eye syndrome critical region protein 5.	0.857
A0A1Y1Z9U5	A0A1Y1YLC2	HAD superfamily hydrolase-like protein.	Uncharacterized protein.	0.534
A0A1Y1Z9U5	A0A1Y1YMI7	HAD superfamily hydrolase-like protein.	HAD-like domain-containing protein.	0.854