A0A1Y1ZUW0 protein (Clohesyomyces aquaticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1ZUW0

F-box domain-containing protein. (543 aa)

Predicted Functional Partners:

A0A1Y1ZHI7

0.639

A0A1Y1ZKT7

0.627

A0A1Y1YD07

0.619

A0A1Y1YJJ2

0.603

A0A1Y1ZPZ3

0.598

A0A1Y1ZIC7

0.589

A0A1Y2AA10

0.585

A0A1Y1Y5X5

0.563

A0A1Y1ZR48

0.544

A0A1Y1ZR66

0.544

Your Current Organism:

Clohesyomyces aquaticus

NCBI taxonomy Id: 1231657
Other names: C. aquaticus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1Y5X5	A0A1Y1ZUW0	WD40-repeat-containing domain protein.	F-box domain-containing protein.	0.563
A0A1Y1YD07	A0A1Y1ZHI7	DNA polymerase.	DNA polymeras-like protein subunit delta-2.	0.999
A0A1Y1YD07	A0A1Y1ZPZ3	DNA polymerase.	ERCC4 domain-containing protein.	0.730
A0A1Y1YD07	A0A1Y1ZUW0	DNA polymerase.	F-box domain-containing protein.	0.619
A0A1Y1YJJ2	A0A1Y1ZIC7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A1Y1YJJ2	A0A1Y1ZKT7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.977
A0A1Y1YJJ2	A0A1Y1ZR48	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A1Y1YJJ2	A0A1Y1ZR66	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	ER protein Pkr1-domain-containing protein.	0.992
A0A1Y1YJJ2	A0A1Y1ZUW0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	F-box domain-containing protein.	0.603
A0A1Y1YJJ2	A0A1Y2AA10	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
A0A1Y1ZHI7	A0A1Y1YD07	DNA polymeras-like protein subunit delta-2.	DNA polymerase.	0.999
A0A1Y1ZHI7	A0A1Y1ZUW0	DNA polymeras-like protein subunit delta-2.	F-box domain-containing protein.	0.639
A0A1Y1ZIC7	A0A1Y1YJJ2	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A1Y1ZIC7	A0A1Y1ZKT7	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.984
A0A1Y1ZIC7	A0A1Y1ZR48	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
A0A1Y1ZIC7	A0A1Y1ZR66	Small nuclear ribonucleoprotein Sm D2.	ER protein Pkr1-domain-containing protein.	0.993
A0A1Y1ZIC7	A0A1Y1ZUW0	Small nuclear ribonucleoprotein Sm D2.	F-box domain-containing protein.	0.589
A0A1Y1ZIC7	A0A1Y2AA10	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
A0A1Y1ZKT7	A0A1Y1YJJ2	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.977
A0A1Y1ZKT7	A0A1Y1ZIC7	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.984