STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03432.1Hypothetical protein; Identified by Glimmer3; putative. (143 aa)    
Predicted Functional Partners:
ACO04032.1
2-nitropropane dioxygenase; Identified by match to protein family HMM PF03060.
       0.773
ACO04793.1
Molybdopterin-synthase adenylyltransferase; Identified by match to protein family HMM PF00899; match to protein family HMM PF05237.
       0.565
ACO03914.1
Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
       0.561
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
       0.545
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
       0.543
ACO03264.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.543
ACO03631.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.543
ACO04522.1
DsrE family protein.
       0.543
ahpC
Alkyl hydroperoxide reductase, C subunit; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
       0.402
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.