STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO02987.1Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. (556 aa)    
Predicted Functional Partners:
ACO04129.1
Heme d1 biosynthesis protein NirJ; Identified by match to protein family HMM PF04055.
  
 0.980
ACO03006.1
Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239.
 
   0.967
petA
ubiquinol-Cytochrome c reductase, iron-sulfur subunit; Identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416.
  
 
 0.947
ACO03072.1
Identified by match to protein family HMM PF00032; match to protein family HMM PF00033.
  
 
 0.941
ACO04284.1
Transcriptional regulator, AsnC/Lrp family.
 
    0.936
ACO03389.1
Cytochrome c oxidase, Cbb3-type, subunit II; Identified by match to protein family HMM PF02433.
 
 
 0.932
ACO04365.1
Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115.
 
 
 0.913
ACO04857.1
Nitric oxide reductase, cytochrome B subunit.
 
 
 0.905
ACO03995.1
Periplasmic nitrate reductase, ferredoxin-type protein NapG; Identified by match to protein family HMM TIGR00397.
 
 
 0.882
ACO04194.1
Nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase); Identified by match to protein family HMM PF02239.
 
    
0.850
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.