Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO02987.1 | ACO03006.1 | PERMA_0307 | PERMA_0309 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | 0.967 |
| ACO02987.1 | ACO03487.1 | PERMA_0307 | PERMA_0313 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Conserved hypothetical protein. | 0.505 |
| ACO02987.1 | ACO04129.1 | PERMA_0307 | PERMA_0308 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Heme d1 biosynthesis protein NirJ; Identified by match to protein family HMM PF04055. | 0.980 |
| ACO02987.1 | ACO04194.1 | PERMA_0307 | PERMA_0306 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase); Identified by match to protein family HMM PF02239. | 0.850 |
| ACO02987.1 | ACO04284.1 | PERMA_0307 | PERMA_0311 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Transcriptional regulator, AsnC/Lrp family. | 0.936 |
| ACO02987.1 | ACO04586.1 | PERMA_0307 | PERMA_0305 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Conserved hypothetical protein. | 0.519 |
| ACO02987.1 | ACO04672.1 | PERMA_0307 | PERMA_0312 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | V4R domain protein; Identified by match to protein family HMM PF02830. | 0.774 |
| ACO02987.1 | cobA | PERMA_0307 | PERMA_0310 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | uroporphyrinogen-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family. | 0.748 |
| ACO03006.1 | ACO02987.1 | PERMA_0309 | PERMA_0307 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | 0.967 |
| ACO03006.1 | ACO03487.1 | PERMA_0309 | PERMA_0313 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Conserved hypothetical protein. | 0.505 |
| ACO03006.1 | ACO04129.1 | PERMA_0309 | PERMA_0308 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Heme d1 biosynthesis protein NirJ; Identified by match to protein family HMM PF04055. | 0.953 |
| ACO03006.1 | ACO04194.1 | PERMA_0309 | PERMA_0306 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase); Identified by match to protein family HMM PF02239. | 0.967 |
| ACO03006.1 | ACO04284.1 | PERMA_0309 | PERMA_0311 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Transcriptional regulator, AsnC/Lrp family. | 0.939 |
| ACO03006.1 | ACO04586.1 | PERMA_0309 | PERMA_0305 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | Conserved hypothetical protein. | 0.519 |
| ACO03006.1 | ACO04672.1 | PERMA_0309 | PERMA_0312 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | V4R domain protein; Identified by match to protein family HMM PF02830. | 0.774 |
| ACO03006.1 | cobA | PERMA_0309 | PERMA_0310 | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | uroporphyrinogen-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family. | 0.769 |
| ACO03487.1 | ACO02987.1 | PERMA_0313 | PERMA_0307 | Conserved hypothetical protein. | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | 0.505 |
| ACO03487.1 | ACO03006.1 | PERMA_0313 | PERMA_0309 | Conserved hypothetical protein. | Heme d1 biosynthesis protein NirF; Identified by match to protein family HMM PF02239. | 0.505 |
| ACO03487.1 | ACO04129.1 | PERMA_0313 | PERMA_0308 | Conserved hypothetical protein. | Heme d1 biosynthesis protein NirJ; Identified by match to protein family HMM PF04055. | 0.505 |
| ACO03487.1 | ACO04194.1 | PERMA_0313 | PERMA_0306 | Conserved hypothetical protein. | Nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase); Identified by match to protein family HMM PF02239. | 0.505 |
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