STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04007.1Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. (607 aa)    
Predicted Functional Partners:
ACO04873.1
Copper-transporting atpase Ran1 (protein responsive toantagonist 1); Identified by match to protein family HMM PF00403.
 
 
 0.968
ACO03117.1
Glycerophosphoryl diester phosphodiesterase; Identified by match to protein family HMM PF03009.
       0.773
ACO04258.1
Soluble hydrogenase 42 kDa subunit (Tritium exchangesubunit); Identified by match to protein family HMM PF00266.
       0.634
ACO03386.1
Identified by match to protein family HMM PF00300.
       0.594
hisZ
Putative histidyl-tRNA synthetase; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.
       0.582
ACO03460.1
Putative peptidase M1, membrane alanine aminopeptidase; Identified by match to protein family HMM PF00595; match to protein family HMM PF01433; match to protein family HMM PF04187.
  
  
 0.492
ACO03534.1
Peptidyl-prolyl cis-trans isomerase, fkbp-type; Identified by match to protein family HMM PF00254.
       0.490
ACO03698.1
Identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.
 
  
 0.418
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.