Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO03295.1 | ACO03414.1 | PERMA_0409 | PERMA_0406 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Identified by match to protein family HMM PF01432. | 0.596 |
| ACO03295.1 | ACO03662.1 | PERMA_0409 | PERMA_0404 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | 0.495 |
| ACO03295.1 | ACO03784.1 | PERMA_0409 | PERMA_0410 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Cytochrome c, class I; Identified by match to protein family HMM PF00034. | 0.475 |
| ACO03295.1 | ACO03842.1 | PERMA_0409 | PERMA_0408 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Putative ribulose bisphosphate carboxylase (RuBisCO); Identified by match to protein family HMM PF00016. | 0.987 |
| ACO03295.1 | ACO03919.1 | PERMA_0409 | PERMA_0896 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | L-fuculose phosphate aldolase; Identified by match to protein family HMM PF00596. | 0.584 |
| ACO03295.1 | ACO04235.1 | PERMA_0409 | PERMA_0407 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.596 |
| ACO03295.1 | ACO04365.1 | PERMA_0409 | PERMA_0411 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115. | 0.453 |
| ACO03295.1 | mtnB | PERMA_0409 | PERMA_1872 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily. | 0.954 |
| ACO03295.1 | mtnD | PERMA_0409 | PERMA_1873 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Acireductone dioxygenase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. | 0.994 |
| ACO03295.1 | pyrD | PERMA_0409 | PERMA_0405 | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.596 |
| ACO03414.1 | ACO03295.1 | PERMA_0406 | PERMA_0409 | Identified by match to protein family HMM PF01432. | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | 0.596 |
| ACO03414.1 | ACO03662.1 | PERMA_0406 | PERMA_0404 | Identified by match to protein family HMM PF01432. | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | 0.634 |
| ACO03414.1 | ACO03842.1 | PERMA_0406 | PERMA_0408 | Identified by match to protein family HMM PF01432. | Putative ribulose bisphosphate carboxylase (RuBisCO); Identified by match to protein family HMM PF00016. | 0.596 |
| ACO03414.1 | ACO04235.1 | PERMA_0406 | PERMA_0407 | Identified by match to protein family HMM PF01432. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.773 |
| ACO03414.1 | pyrD | PERMA_0406 | PERMA_0405 | Identified by match to protein family HMM PF01432. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.796 |
| ACO03662.1 | ACO03295.1 | PERMA_0404 | PERMA_0409 | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase); Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489. | 0.495 |
| ACO03662.1 | ACO03414.1 | PERMA_0404 | PERMA_0406 | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | Identified by match to protein family HMM PF01432. | 0.634 |
| ACO03662.1 | ACO03842.1 | PERMA_0404 | PERMA_0408 | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | Putative ribulose bisphosphate carboxylase (RuBisCO); Identified by match to protein family HMM PF00016. | 0.495 |
| ACO03662.1 | ACO04235.1 | PERMA_0404 | PERMA_0407 | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.634 |
| ACO03662.1 | pyrD | PERMA_0404 | PERMA_0405 | Glucosyl transferase I; Identified by match to protein family HMM PF00534. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. | 0.634 |
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