Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO02987.1 | ACO03389.1 | PERMA_0307 | PERMA_0412 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Cytochrome c oxidase, Cbb3-type, subunit II; Identified by match to protein family HMM PF02433. | 0.932 |
| ACO02987.1 | ACO03784.1 | PERMA_0307 | PERMA_0410 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Cytochrome c, class I; Identified by match to protein family HMM PF00034. | 0.708 |
| ACO02987.1 | ACO04194.1 | PERMA_0307 | PERMA_0306 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Nitrite reductase (Cytochrome cd1) (Cytochromeoxidase) (Hydroxylamine reductase); Identified by match to protein family HMM PF02239. | 0.850 |
| ACO02987.1 | ACO04255.1 | PERMA_0307 | PERMA_0288 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00116. | 0.840 |
| ACO02987.1 | ACO04365.1 | PERMA_0307 | PERMA_0411 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115. | 0.913 |
| ACO02987.1 | ACO04738.1 | PERMA_0307 | PERMA_0025 | Cytochrome c, class I; Identified by match to protein family HMM PF00034; match to protein family HMM PF02239. | Molybdopterin binding oxidoreductase; Identified by match to protein family HMM PF00174. | 0.609 |
| ACO03107.1 | ACO03389.1 | PERMA_1893 | PERMA_0412 | Sulfur oxidation protein SoxX. | Cytochrome c oxidase, Cbb3-type, subunit II; Identified by match to protein family HMM PF02433. | 0.921 |
| ACO03107.1 | ACO03784.1 | PERMA_1893 | PERMA_0410 | Sulfur oxidation protein SoxX. | Cytochrome c, class I; Identified by match to protein family HMM PF00034. | 0.681 |
| ACO03107.1 | ACO04255.1 | PERMA_1893 | PERMA_0288 | Sulfur oxidation protein SoxX. | Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00116. | 0.840 |
| ACO03107.1 | ACO04365.1 | PERMA_1893 | PERMA_0411 | Sulfur oxidation protein SoxX. | Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115. | 0.895 |
| ACO03107.1 | ACO04738.1 | PERMA_1893 | PERMA_0025 | Sulfur oxidation protein SoxX. | Molybdopterin binding oxidoreductase; Identified by match to protein family HMM PF00174. | 0.609 |
| ACO03253.1 | ACO03389.1 | PERMA_0659 | PERMA_0412 | Ethylbenzene dehydrogenase family; Identified by match to protein family HMM PF09459. | Cytochrome c oxidase, Cbb3-type, subunit II; Identified by match to protein family HMM PF02433. | 0.921 |
| ACO03253.1 | ACO03784.1 | PERMA_0659 | PERMA_0410 | Ethylbenzene dehydrogenase family; Identified by match to protein family HMM PF09459. | Cytochrome c, class I; Identified by match to protein family HMM PF00034. | 0.781 |
| ACO03253.1 | ACO04255.1 | PERMA_0659 | PERMA_0288 | Ethylbenzene dehydrogenase family; Identified by match to protein family HMM PF09459. | Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00116. | 0.840 |
| ACO03253.1 | ACO04365.1 | PERMA_0659 | PERMA_0411 | Ethylbenzene dehydrogenase family; Identified by match to protein family HMM PF09459. | Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115. | 0.895 |
| ACO03253.1 | ACO04738.1 | PERMA_0659 | PERMA_0025 | Ethylbenzene dehydrogenase family; Identified by match to protein family HMM PF09459. | Molybdopterin binding oxidoreductase; Identified by match to protein family HMM PF00174. | 0.609 |
| ACO03296.1 | ACO03389.1 | PERMA_0120 | PERMA_0412 | Conserved hypothetical protein. | Cytochrome c oxidase, Cbb3-type, subunit II; Identified by match to protein family HMM PF02433. | 0.863 |
| ACO03296.1 | ACO03784.1 | PERMA_0120 | PERMA_0410 | Conserved hypothetical protein. | Cytochrome c, class I; Identified by match to protein family HMM PF00034. | 0.636 |
| ACO03296.1 | ACO04255.1 | PERMA_0120 | PERMA_0288 | Conserved hypothetical protein. | Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00116. | 0.824 |
| ACO03296.1 | ACO04365.1 | PERMA_0120 | PERMA_0411 | Conserved hypothetical protein. | Putative cytochrome c oxidase, subunit I; Identified by match to protein family HMM PF00115. | 0.857 |
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