STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03888.1Protein-glutamate O-methyltransferase. (147 aa)    
Predicted Functional Partners:
ACO04666.1
EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF08668.
  
     0.644
ACO03144.1
EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF08668.
  
     0.643
ACO04195.1
Putative diguanylate phosphodiesterase; Identified by match to protein family HMM PF08668.
  
     0.640
ACO03653.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01973.
  
     0.627
ACO03068.1
TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
     0.553
kdsA
3-deoxy-8-phosphooctulonate synthase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.
       0.544
ACO03739.1
Putative flagellar protein FlgA; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03170.
  
     0.536
ACO04125.1
Electron transport protein SCO1/SenC; Identified by match to protein family HMM PF02630.
       0.533
ACO03987.1
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
       0.495
ACO02964.1
Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618.
       0.481
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.