STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO02964.1Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. (154 aa)    
Predicted Functional Partners:
ACO04428.1
Biopolymer transport protein ExbD; Identified by match to protein family HMM PF02472.
 
 
 0.995
ACO03068.1
TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.961
ACO04265.1
Biopolymer transport protein ExbD/TolR; Identified by match to protein family HMM PF02472.
 
 
 0.949
ACO04941.1
Hypothetical protein; Identified by Glimmer3; putative.
  
 
 0.813
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.773
ACO03765.1
uracil-DNA glycosylase family 4 protein; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.
       0.773
ACO04567.1
OmpA/MotB; Identified by match to protein family HMM PF00691.
 
   
 0.713
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
     0.691
ACO04125.1
Electron transport protein SCO1/SenC; Identified by match to protein family HMM PF02630.
       0.689
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.