Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO02964.1 | ACO03068.1 | PERMA_0420 | PERMA_0422 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | 0.961 |
| ACO02964.1 | ACO04030.1 | PERMA_0420 | PERMA_0352 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.418 |
| ACO02964.1 | ACO04265.1 | PERMA_0420 | PERMA_1967 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | Biopolymer transport protein ExbD/TolR; Identified by match to protein family HMM PF02472. | 0.949 |
| ACO02964.1 | ACO04428.1 | PERMA_0420 | PERMA_0421 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | Biopolymer transport protein ExbD; Identified by match to protein family HMM PF02472. | 0.995 |
| ACO02964.1 | radA | PERMA_0420 | PERMA_0424 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.773 |
| ACO02964.1 | rnhA | PERMA_0420 | PERMA_0423 | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.773 |
| ACO03068.1 | ACO02964.1 | PERMA_0422 | PERMA_0420 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Biopolymer transport protein ExbB; Identified by match to protein family HMM PF01618. | 0.961 |
| ACO03068.1 | ACO03373.1 | PERMA_0422 | PERMA_1968 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | 0.813 |
| ACO03068.1 | ACO03441.1 | PERMA_0422 | PERMA_1266 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.883 |
| ACO03068.1 | ACO03529.1 | PERMA_0422 | PERMA_1282 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Putative lipoprotein. | 0.777 |
| ACO03068.1 | ACO03651.1 | PERMA_0422 | PERMA_1884 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Conserved hypothetical protein. | 0.823 |
| ACO03068.1 | ACO04030.1 | PERMA_0422 | PERMA_0352 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.866 |
| ACO03068.1 | ACO04265.1 | PERMA_0422 | PERMA_1967 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Biopolymer transport protein ExbD/TolR; Identified by match to protein family HMM PF02472. | 0.912 |
| ACO03068.1 | ACO04428.1 | PERMA_0422 | PERMA_0421 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Biopolymer transport protein ExbD; Identified by match to protein family HMM PF02472. | 0.979 |
| ACO03068.1 | radA | PERMA_0422 | PERMA_0424 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.773 |
| ACO03068.1 | rnhA | PERMA_0422 | PERMA_0423 | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.773 |
| ACO03373.1 | ACO03068.1 | PERMA_1968 | PERMA_0422 | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. | 0.813 |
| ACO03373.1 | ACO04030.1 | PERMA_1968 | PERMA_0352 | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.409 |
| ACO03373.1 | ACO04265.1 | PERMA_1968 | PERMA_1967 | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | Biopolymer transport protein ExbD/TolR; Identified by match to protein family HMM PF02472. | 0.995 |
| ACO03373.1 | ACO04428.1 | PERMA_1968 | PERMA_0421 | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | Biopolymer transport protein ExbD; Identified by match to protein family HMM PF02472. | 0.975 |
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