STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04904.1Putative P pilus assembly, fimbrial Usher protein; Identified by match to protein family HMM PF00577; match to protein family HMM PF05036. (827 aa)    
Predicted Functional Partners:
ACO04631.1
Hypothetical protein; Identified by Glimmer3; putative.
 
 
 0.996
ACO04149.1
Conserved hypothetical protein.
  
  
 0.811
ACO03628.1
Hypothetical protein; Identified by Glimmer3; putative.
  
  
 0.677
ACO03804.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.618
ACO04461.1
VCBS protein; Identified by match to protein family HMM PF05229.
  
  
 0.566
ACO04409.1
Putative outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479.
  
  
 0.487
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
     0.467
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.