STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04415.1Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF02163. (226 aa)    
Predicted Functional Partners:
ACO03074.1
DNA polymerase I; Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.
 
    0.597
ACO04927.1
Ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase); Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.577
ACO04663.1
Manganese transport system ATP-binding protein MntA; Identified by match to protein family HMM PF00005.
     
 0.566
ACO03095.1
ABC-3 protein; Identified by match to protein family HMM PF00950.
  
  
 0.562
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.556
ACO04640.1
Conserved domain protein; Identified by match to protein family HMM PF04023.
       0.553
murF
Udp-murnac-pentapeptide sythetase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
       0.552
ACO03705.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
       0.548
ACO04545.1
Phosphoesterase, RecJ domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.
       0.474
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.459
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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