STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03447.1Conserved domain protein; Identified by match to protein family HMM PF01935. (648 aa)    
Predicted Functional Partners:
ACO03149.1
NurA domain superfamily; Identified by match to protein family HMM PF09376.
   
 
 0.891
ACO03446.1
Peptidase M28; Identified by match to protein family HMM PF04389.
    
  0.787
cgtA
Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
  
  
 0.698
ACO04867.1
Nitrogen-fixing NifU domain protein; Identified by match to protein family HMM PF01592.
   
   0.679
ACO03429.1
Conserved hypothetical protein.
 
     0.643
ACO04202.1
Putative competence protein ComEA helix-hairpin-helix repeat protein; Identified by match to protein family HMM PF00633.
       0.628
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.608
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.605
ACO03135.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04411.
 
     0.595
ACO03496.1
Putative membrane protein.
 
  
 0.585
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.