STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03053.1Pyruvate/ketoisovalerate oxidoreductases common subunit gamma; Identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175. (199 aa)    
Predicted Functional Partners:
ACO03514.1
Pyruvate ferredoxin oxidoreductase beta subunit; Identified by match to protein family HMM PF02775.
 
 0.999
ACO03230.1
Pyruvate ferredoxin oxidoreductase alpha subunit; Identified by match to protein family HMM PF01855.
 
 0.998
orB
Alpha oxoglutarate ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775; match to protein family HMM TIGR02177.
  
 0.993
ACO03789.1
Pyruvate ferredoxin oxidoreductase delta subunit; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179.
 
 
 0.992
ACO03209.1
2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR03710.
  
 0.982
ACO04502.1
ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme); Identified by match to protein family HMM PF00549.
  
 
 0.943
oadA
Oxaloacetate decarboxylase alpha subunit; Identified by match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436; match to protein family HMM TIGR01108.
   
 
 0.938
ACO03979.1
Hydrogenase large subunit; Identified by match to protein family HMM PF00374.
   
 
 0.923
hybA
Hydrogenase-2, small subunit; Identified by match to protein family HMM PF01058.
   
 
 0.920
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
    
 0.919
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.