STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04019.1Hypothetical protein; Identified by Glimmer3; putative. (163 aa)    
Predicted Functional Partners:
ACO03886.1
Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF00005.
       0.773
ACO03818.1
Secretion protein HlyD; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.773
ACO04917.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
       0.773
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
       0.746
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.746
ACO04391.1
Identified by match to protein family HMM PF00753.
       0.746
ACO04474.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.746
ACO04850.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.746
ACO03065.1
Nter region of initiation factor eif-2b alpha subunit 1 from aquifex aeolicus; Identified by match to protein family HMM PF03061.
       0.741
ACO04155.1
Division specific D,D-transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
       0.741
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.