Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO03147.1 | ACO03807.1 | PERMA_1401 | PERMA_0740 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | 0.493 |
| ACO03147.1 | flgB | PERMA_1401 | PERMA_0720 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.432 |
| ACO03147.1 | flhA | PERMA_1401 | PERMA_0726 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.614 |
| ACO03147.1 | flhF | PERMA_1401 | PERMA_0725 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar biosynthetic protein FlhF; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499. | 0.941 |
| ACO03147.1 | fliF | PERMA_1401 | PERMA_0717 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.401 |
| ACO03147.1 | fliG | PERMA_1401 | PERMA_0735 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar motor switch protein FliG; FliG is one of 2 proteins (FliG, FliN) that might form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.771 |
| ACO03147.1 | fliM | PERMA_1401 | PERMA_0734 | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397. | 0.781 |
| ACO03309.1 | ACO03807.1 | PERMA_0724 | PERMA_0740 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | 0.645 |
| ACO03309.1 | ACO04629.1 | PERMA_0724 | PERMA_0716 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Hypothetical protein; Identified by Glimmer3; putative. | 0.655 |
| ACO03309.1 | flgB | PERMA_0724 | PERMA_0720 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.744 |
| ACO03309.1 | flhA | PERMA_0724 | PERMA_0726 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.906 |
| ACO03309.1 | flhF | PERMA_0724 | PERMA_0725 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar biosynthetic protein FlhF; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499. | 0.985 |
| ACO03309.1 | fliE | PERMA_0724 | PERMA_0718 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar hook-basal body complex protein FliE; Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205. | 0.705 |
| ACO03309.1 | fliF | PERMA_0724 | PERMA_0717 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.702 |
| ACO03309.1 | fliG | PERMA_0724 | PERMA_0735 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar motor switch protein FliG; FliG is one of 2 proteins (FliG, FliN) that might form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.854 |
| ACO03309.1 | fliM | PERMA_0724 | PERMA_0734 | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397. | 0.877 |
| ACO03807.1 | ACO03147.1 | PERMA_0740 | PERMA_1401 | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. | 0.493 |
| ACO03807.1 | ACO03309.1 | PERMA_0740 | PERMA_0724 | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | Flagellar biosynthesis switch protein FlhG; Identified by match to protein family HMM PF01656. | 0.645 |
| ACO03807.1 | ACO04629.1 | PERMA_0740 | PERMA_0716 | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | Hypothetical protein; Identified by Glimmer3; putative. | 0.882 |
| ACO03807.1 | flgB | PERMA_0740 | PERMA_0720 | Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.963 |
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