STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03873.1Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (427 aa)    
Predicted Functional Partners:
ACO03098.1
Acriflavin resistance protein AcrE; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.973
ACO04566.1
Multidrug-efflux transporter, MFS family; Identified by match to protein family HMM PF00529.
 
   0.951
ACO04917.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  
 
0.928
ACO04274.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  
 
0.927
ACO03640.1
Efflux system, membrane fusion protein; Identified by match to protein family HMM PF00529.
 
   0.899
ACO03692.1
Major facilitator family transporter; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
    0.841
ACO03984.1
Transcriptional regulator; Identified by match to protein family HMM PF00440.
       0.796
ACO03298.1
MscS Mechanosensitive ion channel; Identified by match to protein family HMM PF00924.
  
    0.775
ACO04410.1
Multidrug ABC transporter; Identified by match to protein family HMM PF00005.
       0.773
ACO03141.1
Arsenate reductase (thioredoxin); Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.771
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.