Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACO03298.1MscS Mechanosensitive ion channel; Identified by match to protein family HMM PF00924. (362 aa)    
Predicted Functional Partners:
ACO03692.1
Major facilitator family transporter; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
  
    0.776
ACO03984.1
Transcriptional regulator; Identified by match to protein family HMM PF00440.
       0.773
ACO03873.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
    0.773
ACO04566.1
Multidrug-efflux transporter, MFS family; Identified by match to protein family HMM PF00529.
       0.773
ACO03640.1
Efflux system, membrane fusion protein; Identified by match to protein family HMM PF00529.
       0.773
ACO04410.1
Multidrug ABC transporter; Identified by match to protein family HMM PF00005.
       0.773
ACO03141.1
Arsenate reductase (thioredoxin); Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.768
ACO03148.1
Multidrug ABC transporter; Identified by match to protein family HMM PF01061.
       0.756
ACO04772.1
Multidrug ABC transporter, permease; Identified by match to protein family HMM PF01061.
       0.756
ACO04054.1
Putative WD40 repeat-containing protein.
       0.541
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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