STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04168.1Serine protease; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family. (587 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
  
    0.782
ACO03827.1
PKD domain protein; Identified by match to protein family HMM PF00801.
 
 
 0.782
ACO03081.1
Conserved hypothetical protein.
       0.774
ACO03394.1
General secretion pathway protein E; Identified by match to protein family HMM PF00437.
     
 0.773
ACO04667.1
Fimbrial assembly protein PilC2; Identified by match to protein family HMM PF00482.
       0.773
ACO04119.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.757
ACO04659.1
Ig family protein.
  
 
 0.710
ACO04145.1
Hemagglutination activity domain protein; Identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
  
 
 0.710
ACO03055.1
Calcium-binding protein.
  
 
 0.710
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.651
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.