STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04913.1Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (393 aa)    
Predicted Functional Partners:
ACO03517.1
Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.968
ACO04178.1
Cation efflux system protein CusA; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.947
ACO03524.1
Cation efflux system protein CzcA; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.787
ACO04534.1
Cation efflux system; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.778
ACO03766.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.670
ACO03790.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.598
ACO03543.1
Transcriptional repressor, CopY family; Identified by match to protein family HMM PF03965.
       0.584
ACO04576.1
Peptidase, M48 family; Identified by match to protein family HMM PF01435; match to protein family HMM PF05569.
       0.584
ACO03704.1
Phosphate-selective porin O and P superfamily protein; Identified by match to protein family HMM PF07396.
  
     0.583
ACO03709.1
Putative lipoprotein.
       0.533
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.