STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hybAHydrogenase-2, small subunit; Identified by match to protein family HMM PF01058. (306 aa)    
Predicted Functional Partners:
ACO03979.1
Hydrogenase large subunit; Identified by match to protein family HMM PF00374.
 0.999
ACO03535.1
Uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit); Identified by match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.987
ACO04853.1
Ni-Fe hydrogenase, cytochrome B subunit; Identified by match to protein family HMM PF01292.
 
 
 0.987
ACO03230.1
Pyruvate ferredoxin oxidoreductase alpha subunit; Identified by match to protein family HMM PF01855.
   
 
 0.923
ACO03514.1
Pyruvate ferredoxin oxidoreductase beta subunit; Identified by match to protein family HMM PF02775.
   
 
 0.922
ACO03053.1
Pyruvate/ketoisovalerate oxidoreductases common subunit gamma; Identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175.
   
 
 0.920
ACO03789.1
Pyruvate ferredoxin oxidoreductase delta subunit; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179.
     
 0.908
cooS
Carbon-monoxide dehydrogenase, catalytic subunit; Identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702.
     
  0.900
ACO04758.1
Ni/Fe hydrogenase, expression/formation protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
 
  
 0.838
ACO03422.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.815
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.