STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04588.1Signal transduction response regulator; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (331 aa)    
Predicted Functional Partners:
ACO03551.1
Metal dependent phosphohydrolase; Identified by match to protein family HMM PF01590; match to protein family HMM PF01966.
  
 0.949
ACO03464.1
Response regulator receiver modulated metal dependent phosphohydrolase; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
    0.935
ACO03466.1
Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 0.822
ACO03222.1
Diguanylate cyclase/phosphodiesterase; Identified by match to protein family HMM PF00563.
 
    0.800
ACO04386.1
Eal/pas/ggdef domain protein; Identified by match to protein family HMM PF00563.
 
    0.799
ACO03333.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
0.587
ACO04002.1
Signal transduction response regulator; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
0.580
ACO03544.1
Ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB); Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
 
      0.565
prtC
Collagenase; Identified by match to protein family HMM PF01136.
       0.561
ACO03699.1
Putative eal/ggdef/pas domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
0.475
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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