STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04275.1Type IV pilus assembly protein TapB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157. (558 aa)    
Predicted Functional Partners:
ACO03462.1
Putative type II secretion system protein; Identified by match to protein family HMM PF00482.
 
 0.982
ACO04667.1
Fimbrial assembly protein PilC2; Identified by match to protein family HMM PF00482.
 
 0.927
pilC
Type IV pilus biogenesis protein PilC; Identified by match to protein family HMM PF00482.
 
 0.927
ACO04637.1
Leader peptidase PppA; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.809
ACO03557.1
Patatin; Identified by match to protein family HMM PF01734.
       0.773
ACO03539.1
Putative pilus; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.733
ACO03009.1
Prokaryotic N- methylation site; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
   0.724
ACO03867.1
Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
   0.627
ACO03224.1
Fimbrial assembly protein; Identified by match to protein family HMM PF05137.
  
 
 0.613
gspG
General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
  
   0.509
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.