STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypDHydrogenase expression/formation protein HypD; Identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075. (370 aa)    
Predicted Functional Partners:
hypC
Hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
 
 
 0.998
hypE
Hydrogenase expression/formation protein HypE; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124.
 
 0.998
hypB
Hydrogenase accessory protein HypB; Identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073.
 
  
 0.912
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.856
hypF
(NiFe) hydrogenase maturation protein HypF; Identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143.
 
  
 0.850
ACO04141.1
HypF finger family; Identified by match to protein family HMM PF07503.
 
  
 0.850
ACO03979.1
Hydrogenase large subunit; Identified by match to protein family HMM PF00374.
 
 
 0.807
ACO03493.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
ACO03568.1
Putative PIN domain protein; Identified by match to protein family HMM PF01850.
       0.773
ACO04758.1
Ni/Fe hydrogenase, expression/formation protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
 
   
 0.731
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.