STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04361.1Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528. (328 aa)    
Predicted Functional Partners:
ACO02991.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
 0.999
ACO03670.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005.
 0.999
ACO04151.1
Transporter; Identified by match to protein family HMM PF00496.
 0.996
ACO03541.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.977
ACO04410.1
Multidrug ABC transporter; Identified by match to protein family HMM PF00005.
  
  
 0.846
ACO04700.1
Citrate synthase.
       0.547
ACO04402.1
Putative nitrogen regulation protein NtrY; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.539
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.504
ACO03460.1
Putative peptidase M1, membrane alanine aminopeptidase; Identified by match to protein family HMM PF00595; match to protein family HMM PF01433; match to protein family HMM PF04187.
  
  
 0.453
ACO04689.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.443
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.