Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACO03992.1Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family. (83 aa)    
Predicted Functional Partners:
ACO02962.1
Cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS); Identified by match to protein family HMM PF00266.
   
 0.966
iscS
Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266.
   
 0.966
ACO03090.1
Conserved hypothetical protein.
 
  
 0.819
ACO03763.1
Thiamine biosynthesis protein; Identified by match to protein family HMM PF02568.
     
 0.811
ACO04867.1
Nitrogen-fixing NifU domain protein; Identified by match to protein family HMM PF01592.
     
 0.805
ACO04373.1
Conserved domain protein; Identified by match to protein family HMM PF01106.
       0.788
ACO03279.1
Conserved hypothetical protein.
       0.780
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.780
ACO04522.1
DsrE family protein.
  
  
 0.650
ACO03469.1
Conserved domain protein.
       0.533
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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