STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04500.1ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728. (309 aa)    
Predicted Functional Partners:
ACO04554.1
Transglutaminase domain protein; Identified by match to protein family HMM PF01841.
 
   
 0.900
ACO04463.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01882.
 
  
 0.877
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
       0.775
ACO04121.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.560
ACO03274.1
Conserved hypothetical protein.
       0.560
ACO03466.1
Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
       0.560
ACO04113.1
Putative von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
  
 0.488
ACO03957.1
Conserved hypothetical protein.
 
  
 0.482
maeB
NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.
   
    0.420
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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