Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO03196.1 | ACO03431.1 | PERMA_1146 | PERMA_1924 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | 0.758 |
| ACO03196.1 | ACO04721.1 | PERMA_1146 | PERMA_1471 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.683 |
| ACO03196.1 | rplK | PERMA_1146 | PERMA_1185 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.739 |
| ACO03196.1 | rplM | PERMA_1146 | PERMA_0429 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.701 |
| ACO03196.1 | rplO | PERMA_1146 | PERMA_1215 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.689 |
| ACO03196.1 | rplQ | PERMA_1146 | PERMA_1225 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.766 |
| ACO03196.1 | rplU | PERMA_1146 | PERMA_0051 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.759 |
| ACO03196.1 | rplX | PERMA_1146 | PERMA_1207 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.692 |
| ACO03196.1 | rpsQ | PERMA_1146 | PERMA_1205 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.786 |
| ACO03196.1 | ybeY | PERMA_1146 | PERMA_1963 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.793 |
| ACO03431.1 | ACO03196.1 | PERMA_1924 | PERMA_1146 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 0.758 |
| ACO03431.1 | ACO04721.1 | PERMA_1924 | PERMA_1471 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.894 |
| ACO03431.1 | rplK | PERMA_1924 | PERMA_1185 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.867 |
| ACO03431.1 | rplM | PERMA_1924 | PERMA_0429 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.909 |
| ACO03431.1 | rplO | PERMA_1924 | PERMA_1215 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.900 |
| ACO03431.1 | rplQ | PERMA_1924 | PERMA_1225 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.883 |
| ACO03431.1 | rplU | PERMA_1924 | PERMA_0051 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.883 |
| ACO03431.1 | rplX | PERMA_1924 | PERMA_1207 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.899 |
| ACO03431.1 | rpsQ | PERMA_1924 | PERMA_1205 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.890 |
| ACO03431.1 | ybeY | PERMA_1924 | PERMA_1963 | 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.858 |
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