STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04786.1Ppic-type ppiase domain protein; Identified by match to protein family HMM PF00639. (325 aa)    
Predicted Functional Partners:
ACO03986.1
NHL repeat protein; Identified by match to protein family HMM PF01436.
 
     0.807
ACO03924.1
NHL repeat domain protein; Identified by match to protein family HMM PF01436.
 
     0.803
ACO04495.1
NHL repeat containing protein; Identified by match to protein family HMM PF01436; match to protein family HMM PF08450.
 
     0.792
ACO03035.1
Cytochrome c family protein.
       0.773
ACO03597.1
Cytochrome c family protein.
       0.773
ACO03592.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.768
ACO04191.1
Cytochrome c552.
       0.756
ACO04444.1
Conserved hypothetical protein.
       0.756
ACO02993.1
Cytochrome c family protein.
       0.756
ACO04721.1
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.568
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.