STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03927.15-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase); Identified by match to protein family HMM PF02538. (524 aa)    
Predicted Functional Partners:
ACO04749.1
Hydantoin utilization protein A (ORF2); Identified by match to protein family HMM PF01968; match to protein family HMM PF05378.
 0.999
ACO04086.1
Conserved hypothetical protein.
       0.773
cysS
cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.549
ACO04236.1
Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.549
ACO03774.1
3-dehydroquinate synthase; Identified by match to protein family HMM PF01959; Belongs to the archaeal-type DHQ synthase family.
       0.444
ACO04908.1
Mce related protein; Identified by match to protein family HMM PF02470.
       0.444
ACO03515.1
Transcriptional regulator; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
       0.422
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.