STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03098.1Acriflavin resistance protein AcrE; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (388 aa)    
Predicted Functional Partners:
ACO04150.1
Cation efflux system; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.990
ACO03873.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
  0.973
ACO04917.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  0.972
ACO04419.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.966
ACO04274.1
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
  0.948
ACO04534.1
Cation efflux system; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.704
ACO03524.1
Cation efflux system protein CzcA; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.698
ACO03227.1
Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF02687.
 
 
 0.697
ACO03825.1
ABC-type transport system, permease component; Identified by match to protein family HMM PF02687.
 
 
 0.692
ACO03886.1
Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF00005.
 
 
 0.610
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.