STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03825.1ABC-type transport system, permease component; Identified by match to protein family HMM PF02687. (400 aa)    
Predicted Functional Partners:
ACO03886.1
Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF00005.
 
 0.996
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.993
ACO03936.1
ABC transporter; Identified by match to protein family HMM PF00005.
 
      0.899
ACO03670.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005.
 
      0.899
ACO03929.1
Spermidine/putrescine import ATP-binding protein PotA; Identified by match to protein family HMM PF00005.
 
      0.899
ACO03541.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
      0.898
ACO03818.1
Secretion protein HlyD; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.897
ACO03227.1
Macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF02687.
 
    
0.834
ACO04941.1
Hypothetical protein; Identified by Glimmer3; putative.
     
 0.790
ACO03098.1
Acriflavin resistance protein AcrE; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.692
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.