STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03083.1Type IV pilus assembly protein PilZ; Identified by match to protein family HMM PF07238. (353 aa)    
Predicted Functional Partners:
fliS
Flagellar protein FliS; Identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208.
  
  
 0.671
ACO03807.1
Chemotactic response regulator CheV; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
  
  
 0.655
ACO04788.1
Putative flagellar hook-associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
    0.653
ACO03319.1
Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
       0.561
ACO04453.1
Putative lipoprotein.
       0.539
glnA
Glutamine synthetase, type I; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
       0.538
ACO04318.1
Chemotaxis protein PomA; Identified by match to protein family HMM PF01618.
  
   0.509
ACO04002.1
Signal transduction response regulator; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
  
 0.493
flgK
Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492.
  
  
 0.493
ACO03703.1
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.
       0.471
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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