STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO03331.1Identified by match to protein family HMM PF02348. (228 aa)    
Predicted Functional Partners:
neuB
N-acetylneuraminate synthase; Identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03569.
  
 0.992
neuC
UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR03568.
  
 0.979
ACO03202.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670.
 
   0.936
ACO03916.1
Nucleotidyl transferase; Identified by match to protein family HMM PF00483; match to protein family HMM PF00571.
 
  
 0.887
ACO03653.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01973.
 
    0.885
ACO02966.1
PIN domain protein; Identified by match to protein family HMM PF01850.
       0.773
ACO04080.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
ACO04679.1
DegT/DnrJ/EryC1/StrS aminotransferase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.704
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
      0.694
ACO04551.1
Flagellar filament 34.5 kDa core protein (Class B); Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 0.663
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.