STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neuCUDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR03568. (390 aa)    
Predicted Functional Partners:
neuB
N-acetylneuraminate synthase; Identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03569.
 
 0.998
ACO03331.1
Identified by match to protein family HMM PF02348.
  
 0.979
ACO03916.1
Nucleotidyl transferase; Identified by match to protein family HMM PF00483; match to protein family HMM PF00571.
 
 
 0.976
ACO04157.1
Transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132; match to protein family HMM TIGR03570.
     0.944
ACO03391.1
Xylose repressor; Identified by match to protein family HMM PF00480.
 
    
 0.910
ACO04324.1
NAD-dependent epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.909
ACO04679.1
DegT/DnrJ/EryC1/StrS aminotransferase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.868
ACO03653.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01973.
  
    0.802
ACO04924.1
Putative polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01554; match to protein family HMM PF01943.
  
  
 0.799
ACO02966.1
PIN domain protein; Identified by match to protein family HMM PF01850.
       0.773
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.