STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04045.1FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF07992. (201 aa)    
Predicted Functional Partners:
ahpC
Alkyl hydroperoxide reductase, C subunit; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.935
trxA
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
  
 
 0.876
ACO04782.1
Thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
 
 0.876
ACO04793.1
Molybdopterin-synthase adenylyltransferase; Identified by match to protein family HMM PF00899; match to protein family HMM PF05237.
  
  
 0.763
lig
DNA ligase (Polydeoxyribonucleotide synthase [ATP])(Lig(Tk)); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
   
 0.684
ACO03086.1
Putative thiol-disulfide oxidoreductase ResA; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 
 0.558
ACO03905.1
Putative lipoprotein.
   
 
 0.558
ACO03123.1
Thiol/disulfide interchange protein; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 
 0.558
ACO04817.1
Redoxin superfamily protein; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 
 0.558
lpdA
Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
  
 
 0.556
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.