Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACO04183.1Identified by match to protein family HMM PF03349. (415 aa)    
Predicted Functional Partners:
ACO03431.1
2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase); Identified by match to protein family HMM PF00501.
 
  
 0.820
ACO04562.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302; similar to protein aq_1273.
    
 
 0.791
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
 
 
 0.770
ACO04239.1
Putative outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
 
 
 0.766
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.581
hisC_2
Histidinol-phosphate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM PF04864; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
    0.557
ACO04134.1
Integral membrane protein; Identified by match to protein family HMM TIGR01906.
       0.549
ACO03051.1
Conserved hypothetical protein.
       0.525
ACO04459.1
Membrane protein involved in aromatic hydrocarbon degradation; Identified by match to protein family HMM PF03349.
  
     0.502
ACO04224.1
Dual specificity protein phosphatase; Identified by match to protein family HMM PF00782.
  
     0.458
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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