STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04778.1Hypothetical protein; Identified by Glimmer3; putative. (78 aa)    
Predicted Functional Partners:
ACO04909.1
DNA polymerase, beta domain protein region; Identified by match to protein family HMM PF01909.
       0.741
ACO04587.1
Conserved hypothetical protein.
       0.741
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
       0.721
rfbF
Glucose-1-phosphate cytidylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623.
       0.714
ACO03407.1
CDP-abequose synthase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.
       0.714
rfbG
CDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622.
       0.714
cysQ
3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
       0.683
ACO04643.1
TrkA-C domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808.
       0.683
ACO03176.1
DegT/DnrJ/EryC1/StrS aminotransferase family enzyme; Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; Belongs to the DegT/DnrJ/EryC1 family.
       0.680
ACO04108.1
CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase); Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
       0.680
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.