STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAL21561.1AraC family transcriptional regulator. (331 aa)    
Predicted Functional Partners:
SAL52925.1
AraC family transcriptional regulator.
  
     0.662
SAL63233.1
Glutamate synthase.
    
  0.656
SAL21569.1
NmrA-like protein.
 
     0.645
SAL34107.1
AraC family transcriptional regulator.
  
   0.633
SAL71605.1
AraC family transcriptional regulator.
  
     0.621
SAL71933.1
AraC family transcriptional regulator.
  
     0.603
SAL47699.1
AraC family transcriptional regulator.
  
     0.591
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.579
SAL32800.1
AraC family transcriptional regulator.
  
   0.543
SAL14324.1
AraC family transcriptional regulator.
  
   0.518
Your Current Organism:
Caballeronia udeis
NCBI taxonomy Id: 1232866
Other names: Burkholderia sp. LMG 27134, Burkholderia sp. LMG 27135, Burkholderia sp. R-20941, Burkholderia udeis, Burkholderia udeis Vandamme et al. 2013, C. udeis, CCUG 63061, Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 27134, LMG:27134, Paraburkholderia udeis, strain Hg2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.