STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAL28827.1Protein lysB. (144 aa)    
Predicted Functional Partners:
SAL28800.1
Phage tail protein.
  
    0.871
SAL28778.1
Fels-2 prophage protein.
  
    0.870
SAL28805.1
Membrane protein.
       0.797
SAL28811.1
Membrane protein.
       0.797
SAL28819.1
Phage-encoded peptidoglycan binding protein.
       0.796
SAL28844.1
Phage tail completion protein.
  
    0.759
SAL28855.1
Phage tail completion protein.
  
    0.758
SAL28761.1
Major capsid protein.
  
    0.747
SAL28771.1
Phage terminase, endonuclease subunit.
  
    0.743
SAL28742.1
Capsid scaffolding.
  
    0.705
Your Current Organism:
Caballeronia udeis
NCBI taxonomy Id: 1232866
Other names: Burkholderia sp. LMG 27134, Burkholderia sp. LMG 27135, Burkholderia sp. R-20941, Burkholderia udeis, Burkholderia udeis Vandamme et al. 2013, C. udeis, CCUG 63061, Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 27134, LMG:27134, Paraburkholderia udeis, strain Hg2
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