STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAL39553.1Di-heme cytochrome c peroxidase. (478 aa)    
Predicted Functional Partners:
SAL59749.1
Selenium-binding protein.
  
 
 0.731
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.729
SAL67635.1
Putative lipoprotein.
   
 
 0.729
SAL71258.1
Putative lipoprotein.
   
 
 0.729
SAL29182.1
Hypothetical protein.
  
 
 0.708
SAL38088.1
Hypothetical protein.
  
 
 0.708
SAL40593.1
YVTN beta-propeller repeat-containing protein.
  
 
 0.708
SAL41934.1
YVTN beta-propeller repeat-containing protein.
  
 
 0.708
SAL42485.1
YVTN beta-propeller repeat-containing protein.
  
 
 0.708
SAL59045.1
Lipoprotein.
  
 
 0.708
Your Current Organism:
Caballeronia udeis
NCBI taxonomy Id: 1232866
Other names: Burkholderia sp. LMG 27134, Burkholderia sp. LMG 27135, Burkholderia sp. R-20941, Burkholderia udeis, Burkholderia udeis Vandamme et al. 2013, C. udeis, CCUG 63061, Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 27134, LMG:27134, Paraburkholderia udeis, strain Hg2
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