STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAL49587.1AbrB family transcriptional regulator. (80 aa)    
Predicted Functional Partners:
SAL49594.1
Twitching motility protein PilT.
 
   
 0.951
SAL64598.1
Transcriptional modulator of MazE/toxin, MazF.
 
 0.865
SAL20434.1
Transcriptional modulator of MazE/toxin, MazF.
 
 0.852
SAL15156.1
Growth inhibitor PemK.
 
 0.851
SAL68074.1
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
 
 0.841
vapC-2
PilT domain-containing protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.778
SAL73842.1
PIN domain protein.
 
     0.645
yafQ
mRNA interferase YafQ.
 
  
 0.550
SAL66911.1
PilT domain-containing protein.
  
     0.513
SAL73848.1
AbrB family transcriptional regulator.
 
  
 0.513
Your Current Organism:
Caballeronia udeis
NCBI taxonomy Id: 1232866
Other names: Burkholderia sp. LMG 27134, Burkholderia sp. LMG 27135, Burkholderia sp. R-20941, Burkholderia udeis, Burkholderia udeis Vandamme et al. 2013, C. udeis, CCUG 63061, Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 27134, LMG:27134, Paraburkholderia udeis, strain Hg2
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