STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK39328.1CRISPR-associated helicase, Cas3 family. (1126 aa)    
Predicted Functional Partners:
SEK86237.1
CRISPR-associated protein, Cse4 family.
  
 
 0.960
SEK86286.1
CRISPR-associated protein, Cas5e family.
  
 
 0.960
SEK86198.1
CRISPR-associated protein, Cse3 family.
   
 
 0.959
SEK86133.1
CRISPR system Cascade subunit CasA.
  
 
 0.955
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.954
SEK39408.1
CRISPR-associated protein, Csy2 family.
 
   
 0.888
SEK39371.1
CRISPR-associated protein, Csy1 family.
 
   
 0.887
SEK39489.1
CRISPR-associated protein, Csy4 family.
 
   
 0.884
SEK39451.1
CRISPR-associated protein, Csy3 family.
 
   
 0.883
SEK39184.1
Uncharacterized membrane protein YfcA.
 
     0.566
Your Current Organism:
Nitrosovibrio tenuis
NCBI taxonomy Id: 1233
Other names: N. tenuis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.