STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK43404.1Iron-regulated ABC transporter permease protein SufD. (436 aa)    
Predicted Functional Partners:
SEK43307.1
Iron-regulated ABC transporter membrane component SufB.
 
 
0.999
SEK43362.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
 0.999
SEK43452.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.999
SEK43511.1
Nitrogen fixation protein NifU.
 
  
 0.989
SEK43268.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.876
SEK43557.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
   
 0.810
SEK43215.1
Transcriptional regulator, BadM/Rrf2 family.
     
 0.622
erpA
Iron-sulfur cluster insertion apoprotein erpA; Required for insertion of 4Fe-4S clusters.
  
 
 0.594
SEL67240.1
HxxPF-repeated domain-containing protein.
   
  
 0.458
Your Current Organism:
Nitrosovibrio tenuis
NCBI taxonomy Id: 1233
Other names: N. tenuis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.