STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK96684.1Uncharacterized protein involved in outer membrane biogenesis. (1042 aa)    
Predicted Functional Partners:
SEL41445.1
Cholesterol transport system auxiliary component.
  
     0.633
SEK85389.1
Hypothetical protein.
  
     0.527
SEK42277.1
Uncharacterized membrane protein.
  
     0.524
SEK61090.1
Uncharacterized membrane protein.
  
     0.522
SEL61607.1
Glycine-zipper containing OmpA-like membrane domain-containing protein.
  
     0.498
SEK42095.1
Hypothetical protein.
  
     0.446
SEK42239.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.440
SEK60810.1
Hypothetical protein.
  
     0.438
SEK42311.1
Extracellular protein.
  
     0.435
SEK61054.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.415
Your Current Organism:
Nitrosovibrio tenuis
NCBI taxonomy Id: 1233
Other names: N. tenuis
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