STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL19121.1Serine protease Do/serine protease DegQ; Belongs to the peptidase S1C family. (454 aa)    
Predicted Functional Partners:
SEK60095.1
Anti sigma-E protein, RseA.
  
 
 0.923
SEL40601.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
   
  0.902
SEK62665.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.890
SEL29561.1
3-hydroxyacyl-CoA dehydrogenase.
    
  0.861
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.858
SEL28974.1
KAP family P-loop domain-containing protein.
   
 
  0.857
SEL29667.1
acyl-CoA dehydrogenase.
    
  0.829
SEL40741.1
acyl-CoA dehydrogenase.
    
  0.829
SEK42783.1
Probable Rubsico expression protein CbbX.
    
  0.793
SEL12318.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
    
  0.793
Your Current Organism:
Nitrosovibrio tenuis
NCBI taxonomy Id: 1233
Other names: N. tenuis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.