SEL33982.1 protein (Nitrosovibrio tenuis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEL33982.1

PEP-CTERM protein-sorting domain-containing protein. (303 aa)

Predicted Functional Partners:

guaA

0.927

SEL67240.1

0.917

SEK42603.1

0.915

SEL34385.1

0.915

SEK80533.1

0.914

SEK66824.1

0.905

SEL30961.1

0.832

SEK36378.1

0.800

SEL54946.1

0.797

SEK80135.1

0.766

Your Current Organism:

Nitrosovibrio tenuis

NCBI taxonomy Id: 1233
Other names: N. tenuis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK36378.1	SEK80135.1	SAMN05216387_101251	SAMN05216387_10361	Multicopper oxidase.	PEP-CTERM protein-sorting domain-containing protein.	0.650
SEK36378.1	SEL33982.1	SAMN05216387_101251	SAMN05216387_1093	Multicopper oxidase.	PEP-CTERM protein-sorting domain-containing protein.	0.800
SEK36378.1	SEL67240.1	SAMN05216387_101251	SAMN05216387_1321	Multicopper oxidase.	HxxPF-repeated domain-containing protein.	0.443
SEK36378.1	guaA	SAMN05216387_101251	SAMN05216387_10267	Multicopper oxidase.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.570
SEK42603.1	SEL33982.1	SAMN05216387_101409	SAMN05216387_1093	Cytochrome c peroxidase.	PEP-CTERM protein-sorting domain-containing protein.	0.915
SEK66824.1	SEK80135.1	SAMN05216387_102321	SAMN05216387_10361	Hypothetical protein.	PEP-CTERM protein-sorting domain-containing protein.	0.832
SEK66824.1	SEK80533.1	SAMN05216387_102321	SAMN05216387_10371	Hypothetical protein.	Chorismate mutase.	0.736
SEK66824.1	SEL33982.1	SAMN05216387_102321	SAMN05216387_1093	Hypothetical protein.	PEP-CTERM protein-sorting domain-containing protein.	0.905
SEK66824.1	SEL54946.1	SAMN05216387_102321	SAMN05216387_1151	Hypothetical protein.	Amino acid adenylation domain-containing protein.	0.534
SEK66824.1	SEL67240.1	SAMN05216387_102321	SAMN05216387_1321	Hypothetical protein.	HxxPF-repeated domain-containing protein.	0.658
SEK66824.1	guaA	SAMN05216387_102321	SAMN05216387_10267	Hypothetical protein.	GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.925
SEK80135.1	SEK36378.1	SAMN05216387_10361	SAMN05216387_101251	PEP-CTERM protein-sorting domain-containing protein.	Multicopper oxidase.	0.650
SEK80135.1	SEK66824.1	SAMN05216387_10361	SAMN05216387_102321	PEP-CTERM protein-sorting domain-containing protein.	Hypothetical protein.	0.832
SEK80135.1	SEL33982.1	SAMN05216387_10361	SAMN05216387_1093	PEP-CTERM protein-sorting domain-containing protein.	PEP-CTERM protein-sorting domain-containing protein.	0.766
SEK80135.1	SEL67240.1	SAMN05216387_10361	SAMN05216387_1321	PEP-CTERM protein-sorting domain-containing protein.	HxxPF-repeated domain-containing protein.	0.651
SEK80533.1	SEK66824.1	SAMN05216387_10371	SAMN05216387_102321	Chorismate mutase.	Hypothetical protein.	0.736
SEK80533.1	SEL30961.1	SAMN05216387_10371	SAMN05216387_10862	Chorismate mutase.	Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.430
SEK80533.1	SEL33982.1	SAMN05216387_10371	SAMN05216387_1093	Chorismate mutase.	PEP-CTERM protein-sorting domain-containing protein.	0.914
SEK80533.1	SEL54946.1	SAMN05216387_10371	SAMN05216387_1151	Chorismate mutase.	Amino acid adenylation domain-containing protein.	0.554
SEK80533.1	SEL67240.1	SAMN05216387_10371	SAMN05216387_1321	Chorismate mutase.	HxxPF-repeated domain-containing protein.	0.693