SEL61607.1 protein (Nitrosovibrio tenuis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEL61607.1

Glycine-zipper containing OmpA-like membrane domain-containing protein. (189 aa)

Predicted Functional Partners:

SEL61647.1

0.766

SEK63404.1

0.612

SEK81999.1

0.612

SEK63349.1

0.591

SEL61433.1

0.588

SEL24316.1

0.531

SEK70580.1

0.515

SEK96684.1

0.498

SEL02022.1

0.487

SEL41445.1

0.463

Your Current Organism:

Nitrosovibrio tenuis

NCBI taxonomy Id: 1233
Other names: N. tenuis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK63349.1	SEK63404.1	SAMN05216387_102220	SAMN05216387_102222	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Glycosyltransferase involved in cell wall bisynthesis.	0.939
SEK63349.1	SEK81999.1	SAMN05216387_102220	SAMN05216387_103112	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Protoporphyrinogen oxidase.	0.676
SEK63349.1	SEL61433.1	SAMN05216387_102220	SAMN05216387_11824	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.	0.494
SEK63349.1	SEL61607.1	SAMN05216387_102220	SAMN05216387_11829	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.591
SEK63404.1	SEK63349.1	SAMN05216387_102222	SAMN05216387_102220	Glycosyltransferase involved in cell wall bisynthesis.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.939
SEK63404.1	SEL61433.1	SAMN05216387_102222	SAMN05216387_11824	Glycosyltransferase involved in cell wall bisynthesis.	Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.	0.882
SEK63404.1	SEL61607.1	SAMN05216387_102222	SAMN05216387_11829	Glycosyltransferase involved in cell wall bisynthesis.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.612
SEK70580.1	SEL61607.1	SAMN05216387_102411	SAMN05216387_11829	Flagella synthesis protein FlgN.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.515
SEK81999.1	SEK63349.1	SAMN05216387_103112	SAMN05216387_102220	Protoporphyrinogen oxidase.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.676
SEK81999.1	SEL61607.1	SAMN05216387_103112	SAMN05216387_11829	Protoporphyrinogen oxidase.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.612
SEK96684.1	SEL41445.1	SAMN05216387_10421	SAMN05216387_11076	Uncharacterized protein involved in outer membrane biogenesis.	Cholesterol transport system auxiliary component.	0.633
SEK96684.1	SEL61607.1	SAMN05216387_10421	SAMN05216387_11829	Uncharacterized protein involved in outer membrane biogenesis.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.498
SEL02022.1	SEL61607.1	SAMN05216387_104155	SAMN05216387_11829	Hypothetical protein.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.487
SEL24316.1	SEL61607.1	SAMN05216387_10762	SAMN05216387_11829	Hypothetical protein.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.531
SEL41445.1	SEK96684.1	SAMN05216387_11076	SAMN05216387_10421	Cholesterol transport system auxiliary component.	Uncharacterized protein involved in outer membrane biogenesis.	0.633
SEL41445.1	SEL61607.1	SAMN05216387_11076	SAMN05216387_11829	Cholesterol transport system auxiliary component.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.463
SEL61433.1	SEK63349.1	SAMN05216387_11824	SAMN05216387_102220	Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.494
SEL61433.1	SEK63404.1	SAMN05216387_11824	SAMN05216387_102222	Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.	Glycosyltransferase involved in cell wall bisynthesis.	0.882
SEL61433.1	SEL61607.1	SAMN05216387_11824	SAMN05216387_11829	Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.	Glycine-zipper containing OmpA-like membrane domain-containing protein.	0.588
SEL61607.1	SEK63349.1	SAMN05216387_11829	SAMN05216387_102220	Glycine-zipper containing OmpA-like membrane domain-containing protein.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.	0.591